What is BEAST? BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies …

Jul 9, 2024 · BEAST X is the new name for BEAST v1 project and the first release version of this is v10.5.0 which supersedes v1.10.4 in the old version system. From now on we will use the …

Downloading and installing BEAST on Windows BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees.

FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures.

Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis. If you haven’t already, download …

Using BEAGLE with BEAST BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics package. It …

Click Copy and open the link in a new browser tab/window. To summarise Bayes factor support for rates, select the Discrete Rates tab. Load the output BEAST file containing the spatial rates …

TempEst (formerly known as ‘Path-O-Gen’) is a tool for investigating the temporal signal and ‘clocklikeness’ of molecular phylogenies. It can read and analyse contemporaneous trees …

Downloading and installing BEAST on UNIX/Linux BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees.

To inform BEAUti/BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option. By default all the taxa are assumed to have a date of zero …